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feat: adding command "db create seqvars-clinvar" (#24) #25

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merged 7 commits into from
Mar 31, 2023

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@holtgrewe holtgrewe linked an issue Mar 29, 2023 that may be closed by this pull request
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@holtgrewe holtgrewe force-pushed the 24-implement-clinvar-annotation branch from 7b1aa59 to d305856 Compare March 29, 2023 12:50
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codecov bot commented Mar 29, 2023

Codecov Report

Patch coverage: 21.05% and project coverage change: -4.28 ⚠️

Comparison is base (0360675) 78.93% compared to head (dc4208d) 74.65%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #25      +/-   ##
==========================================
- Coverage   78.93%   74.65%   -4.28%     
==========================================
  Files          10       11       +1     
  Lines        2592     2774     +182     
==========================================
+ Hits         2046     2071      +25     
- Misses        546      703     +157     
Impacted Files Coverage Δ
src/db/create/seqvar_clinvar.rs 0.00% <0.00%> (ø)
src/db/create/seqvar_freqs/mod.rs 72.69% <0.00%> (-0.45%) ⬇️
src/main.rs 0.00% <0.00%> (ø)
src/annotate/seqvars/csq.rs 72.21% <46.66%> (-0.83%) ⬇️
src/annotate/seqvars/mod.rs 68.40% <63.82%> (-0.39%) ⬇️
src/annotate/seqvars/provider.rs 89.47% <100.00%> (-0.13%) ⬇️

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@holtgrewe holtgrewe force-pushed the 24-implement-clinvar-annotation branch from 6223027 to dc4208d Compare March 31, 2023 11:28
@holtgrewe holtgrewe merged commit fd4c523 into main Mar 31, 2023
@holtgrewe holtgrewe deleted the 24-implement-clinvar-annotation branch March 31, 2023 11:46
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Implement ClinVar annotation
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